| Various Artists
Genuine Houserockin' Music IV
03: Charlie Musselwhite - River Hip Mama
| | Alligator USA | ALCD 104 | 1990 | CD Album | 0 | | |
| Various Artists
Guitar Player Presents Legends Of Guitar - Electric Blues, Vol. 1
13: Charlie Musselwhite's South Side Band - Help Me
| | Rhino USA | R2 70716 | 1990 | CD Album | 0 | | |
| Various Artists
...Makes The Blues Come Alive
02: Charlie Musselwhite - River Hip Mama
| | Alligator Sweden | CDALS 1 | Mar 1990 | CD Album | 0 | | |
| Various Artists
Alligator Makes The Blues Come Alive
02: Charlie Musselwhite - River Hip Mama
| | Alligator Europe | ALCD 0007 | 1991 | CD Album | 0 | | |
| Various Artists
The Alligator Records 20th Anniversary Collection
1-15: Charlie Musselwhite - Leaving Your Town
| | Alligator USA | ALCD 105/6 | 1991 | Double CD | 34 | | |
| Various Artists
The Alligator Records 20th Anniversary Collection
1-15: Charlie Musselwhite - Leaving Your Town
| | Alligator Europe | DICD 3684 | 1991 | Double CD | 0 | | |
| Various Artists
Comin' Home To The Blues
04: Charlie Musselwhite - The Blues Overtook Me
| | Music Club UK | MCCD 016 | 1991 | CD Album | 0 | | |
| Various Artists
Blues Masters, Volume 4: Harmonica Classics
18: Charlie Musselwhite - Christo Redemptor
| | Rhino USA | R2 71124 | 1992 | CD Album | 2 | | |
| Various Artists
The Best Of Mountain Stage Live, Vol. 4
11: Charlie Musselwhite - It's Getting Warm In Here
| | This Way Up Europe | 514 910-2 | 1993 | CD Album | 0 | | |
| Various Artists
Genuine Houserockin' Music V
16: Charlie Musselwhite - Hear Me Talkin'
| | Alligator USA | ALCD 109 | 1993 | CD Album | 0 | | |
| Various Artists
Blues Harp Boogie - 25 Years Of Blues Harmonica
08: Charlie Musselwhite - I'm Goin' Home
| | Music Club UK | MCCD 124 | 1993 | CD Album | 0 | | |
| Various Artists
Singin' The Blues
03: Charlie Musselwhite - Trouble No More
| | Blues Legends Canada | BLS12132 | 1994 | CD Album | 1 | | |
| Various Artists
Cryin' The Blues
10: Charlie Musselwhite - Christo Redemptor
| | St. Clair Canada | BLS12172 | 1994 | CD Album | 0 | | |
| Various Artists
Prime Chops Volume 3
06: Charlie Musselwhite - Pistol In Your Face
| | Blind Pig USA | BPCD 8003 | 1995 | CD Album | 0 | | |
| Various Artists
Blues Live From Mountain Stage
06: Charlie Musselwhite - Blues Why Do You Worry Me?
| | Blue Plate Music USA | BPM-305CD | 1995 | CD Album | 0 | | |
| Various Artists
Let's Have A Blues Ball! Music Of The Juke Joints
16: Charlie Musselwhite - If Trouble Was Money
| | Ace UK | CDCHD 590 | 1995 | CD Album | 0 | | |
| Various Artists
The 25th Anniversary Collection
1-05: Charlie Musselwhite - Stingaree
| | Alligator USA | ALCD 110/111 | 1996 | Double CD | 0 | | |
| Various Artists
Down Home Urban Blues Classics
05: Charlie Musselwhite - Up And Down The Avenue
| | Arhoolie USA | CD-102 | 1996 | CD Album | 4 | | |
| Various Artists
Nothing But The Blues
2-16: Charlie Musselwhite And The Dynatones - She Used To Be Beautiful
| | Emporio UK | DEMPCD 006 | 1996 | Double CD | 0 | | |
| Various Artists
True Blues
08: Charlie Musselwhite - Catwalk
| | BMG Direct USA | DPC1-1284 | 1996 | CD Album | 0 | | |
| Various Artists
To Cry You A Song - A Collection Of Tull Tales
08: Charlie Musselwhite - Cat's Squirrel
| | Roadrunner Europe | RR 8872.2 | 1996 | CD Album | 0 | | |
| Various Artists
To Cry You A Song - A Collection Of Tull Tales
08: Charlie Musselwhite - Cat’s Squirrel
| | Magna Carta USA | MA-9009-2 | 24 Aug 1996 | CD Album | 0 | | |
| Various Artists
Vanguard Collector's Edition
3-10: Charlie Musselwhite - Christo Redemptor
| | Vanguard USA | 163/66-2 | 1997 | CD Box Set | 0 | | |
| Various Artists
Generations Of Blues, Vol. 2: Born In Chicago
03: Charlie Musselwhite - Little By Little
| | Vanguard USA | 78006-2 | 1998 | CD Album | 0 | | |
| Various Artists
Bishopstock Blues Festival '99 (Keeping The Faith) (Blues Festival Sampler CD)
16: Charlie Musselwhite - Leaving Blues
| | [none] UK | | 1999 | Promo Only | 0 | | |
| Various Artists
The Best Of The Blues On Alligator Records
14: Charlie Musselwhite - Hear Me Talkin'
| | Alligator USA | ALCD 1205 | 1999 | CD Album | 0 | | |
| James Cotton · Billy Branch · Charlie Musselwhite · Sugar Ray Norcia
Superharps
03: Charlie Musselwhite, Sugar Ray Norcia - Blues, Why Do You Worry Me? 07: Charlie Musselwhite, James Cotton - If I Should Have Bad Luck 11: Charlie Musselwhite, Sugar Ray Norcia, Billy Branch, James Cotton - Harp To Harp
| | Telarc USA | CD-83472 | 1999 | CD Album | 0 | | |
| Various Artists
The I-10 Chronicles
08: Charlie Musselwhite - Black Magic Woman
| | Back Porch Europe | 7243 8 48991 2 7 | 2000 | CD Album | 0 | | |
| Various Artists
Arhoolie Records 40th Anniversary Collection: The Journey Of Chris Strachwitz
2-21: Charlie Musselwhite - Finger Lickin' Good
| | Arhoolie USA | CD 491 | 2000 | CD Box Set | 0 | | |
| Various Artists
Blues Here & There
03: Charlie Musselwhite - Key To The Highway (Live)
| | Crimson UK | CRIMCD271 | 2000 | CD Album | 0 | | |
| Various Artists
Down The Dirt Road - The Songs Of Charley Patton
03: Charlie Musselwhite - Pea Vine Blues
| | Telarc Blues Europe | CD-83535 | 2001 | CD Album | 0 | | |
| Various Artists
Labour Of Love The Music Of Nick Lowe
10: Charlie Musselwhite - Faithless Lover
| | Telarc USA | CD-83538 | 2001 | CD Album | 0 | | |
| Various Artists
The Blues White Album
10: Charlie Musselwhite - Dear Prudence
| | Telarc Blues Europe | CD-83553 | 2002 | CD Album | 0 | | |
| Various Artists
Bare Blues - Instrumental Gems
02: Charlie Musselwhite - Chicago Sunset
| | Blind Pig USA | BPCD 8005 | 2004 | CD Album | 0 | | |
| Various Artists
Por Vida - A Tribute To The Songs Of Alejandro Escovedo
2-08: Charlie Musselwhite - Everybody Loves Me
| | Cooking Vinyl UK | COOKCD316 | 2004 | Double CD | 0 | | |
| Various Artists
Blues Masters
07: Charlie Musselwhite - Hey Miss Bessie
| | Silverline USA | 284526-2 | 2006 | DualDisc | 0 | | |
| Various Artists
Vanguard/The Blues/Forever!
06: Charlie Musselwhite - Cha Cha The Blues
| | Vanguard USA | 939-2 | 2006 | CD Album | 1 | | |
| Barry Goldberg
The Works
07: Charlie Musselwhite - Early In The Morning
| | [none] USA | | 2010 | CD Album | 4 | | |
| Various Artists
Alligator Records 40th Anniversary Collection
2-09: Charlie Musselwhite - Where Hwy 61 Runs
| | Alligator USA | ALCD 125/126 | 2011 | Double CD | 0 | | |
| Various Artists
Remembering Little Walter
02: Charlie Musselwhite - Just A Feeling 06: Charlie Musselwhite - One Of These Mornings 11: Charlie Musselwhite, Sugar Ray Norcia, Mark Hummel, Billy Boy Arnold, James Harman - My Babe
| | Blind Pig USA | BPCD 5154 | 2013 | CD Album | 0 | 8.3 | |
| Various Artists
Monitor This! Feb/Mar 13
04: Ben Harper And Charlie Musselwhite - I Don't Believe A Word You Say
| | The Music Monitor Network USA | | Feb 2013 | Promo Only | 0 | | |
| Various Artists
Alligator Records 45th Anniversary Collection
1-06: Charlie Musselwhite - The Well
| | Alligator USA | ALCD 127/28 | 2016 | Double CD | 0 | | |
| Various Artists
40th Anniversary Collection
1-14: Charlie Musselwhite - Chicago Sunset
| | Blind Pig USA | BPCD 5170 | 2017 | CD Album | 0 | | |